Accessibility percolation with backsteps
نویسندگان
چکیده
Consider a graph in which each site is endowed with a value called fitness. A path in the graph is said to be “open” or “accessible” if the fitness values along that path is strictly increasing. We say that there is accessibility percolation between two sites when such a path between them exists. Motivated by the so called House-of-Cards model from evolutionary biology, we consider this question on the L-hypercube {0, 1} where the fitness values are independent random variables. We show that, in the large L limit, the probability that an accessible path exists from an arbitrary starting point to the (random) fittest site is no more than x1/2 = 1− 2 sinh −1(2) = 0.27818 . . . and we conjecture that this probability does converge to x1/2. More precisely, there is a phase transition on the value of the fitness x of the starting site: assuming that the fitnesses are uniform in [0, 1], we show that, in the large L limit, there is almost surely no path to the fittest site if x > x1/2 and we conjecture that there are almost surely many paths if x < x1/2. If one conditions on the fittest site to be on the opposite corner of the starting site rather than being randomly chosen, the picture remains the same but with the critical point being now x1 = 1 − sinh−1(1) = 0.11863 . . .. Along the way, we obtain a large L estimation for the number of self-avoiding paths joining two opposite corners of the L-hypercube. 2000 Mathematics Subject Classification: Primary 60J80; Secondary 60G18
منابع مشابه
Accessibility percolation and first-passage site percolation on the unoriented binary hypercube
Inspired by biological evolution, we consider the following socalled accessibility percolation problem: The vertices of the unoriented ndimensional binary hypercube are assigned independent U(0, 1) weights, referred to as fitnesses. A path is considered accessible if fitnesses are strictly increasing along it. We prove that the probability that the global fitness maximum is accessible from the ...
متن کاملKinesin backsteps.
Kinesin-1 is a walking machine that takes ~8 nm steps along microtubules. Some aspects of the molecular mechanism of walking are now clear, but many are not. In the present paper, we discuss currently controversial points, focusing on the pathways by which kinesin takes occasional backsteps. Backsteps represent failures of the forwards-biasing mechanism. By studying the mechanochemistry of back...
متن کاملAccessibility percolation on n-trees
–Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in ascending order. For the case when the random variables are independent and identically distributed, we derive an asymptotically exact expression for the prob...
متن کاملKinesin's backsteps under mechanical load.
Kinesins move processively toward the plus end of microtubules by hydrolyzing ATP for each step. From an enzymatic perspective, the mechanism of mechanical motion coupled to the nucleotide chemistry is often well explained using a single-loop cyclic reaction. However, several difficulties arise in interpreting kinesin's backstepping within this framework, especially when external forces oppose ...
متن کاملHow occasional backstepping can speed up a processive motor protein
Fueled by the hydrolysis of ATP, the motor protein kinesin literally walks on two legs along the biopolymer microtubule. The number of accidental backsteps that kinesin takes appears to be much larger than what one would expect given the amount of free energy that ATP hydrolysis makes available. This indicates that backsteps are not simply the forward stepping cycle run backwards. We propose he...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2014